Download Expression Profile of Each Dataset

Knock-Method T(co)F Species T(co)F Class T(co)F Superclass Biosample Name Tissue
Type
Biosample Type Data Source Profile ID Platform Pubmed ID Download
siRNA Smad4 Mus musculus SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold bEnd3 Brain Cell line GEO GSE15736 GPL1261 21397841 txt
siRNA Sox10 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains B16F10 Melanoma Cell line GEO GSE25501 GPL6238 22363655 txt
siRNA Sox17 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains NG4 Embryo Stem cell GEO GSE39770 GPL1261 23103054 txt
siRNA Sox2 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains NG4 Embryo Stem cell GEO GSE39771 GPL1261 23103054 txt
siRNA Stat3 Mus musculus STAT domain factors Immunoglobulin fold RAW264.7 Macrophage_
cells
Cell line GEO GSE152986 GPL17791 32730332 txt
siRNA Twist1 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains MC3T3-E1 Heart Cell line GEO GSE30953 GPL1261 22242143 txt
siRNA Wt1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains LB-22 Embryo_
kidney
Cell line GEO GSE66356 GPL1261 25804736 txt
siRNA Xbp1 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Liver Liver Tissue GEO GSE40515 GPL11180 23040070 txt
siRNA Zbed6 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains C2C12 Muscle Cell line GEO GSE33430 GPL6885 24714595 txt
siRNA Dnmt1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains AtT-20 Pituitary_
gland
Cell line GEO GSE10552 GPL1261 18922972 txt
siRNA Cpeb1 Mus musculus Others Unclassified Structure Neuro-2a Neuron Primary cell GEO GSE147604 GPL1261 35496917 txt
siRNA Bcl3 Mus musculus Rel homology region (RHR) factors Immunoglobulin fold bone marrow derived macrophage (BMDM) Bone_marrow Primary cell GEO GSE39922 GPL6885 23063365 txt
siRNA Dnmt3a Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains peritoneal macrophages Peritoneum Primary cell GEO GSE70631 GPL7202 27240213 txt
siRNA Stat5b Mus musculus STAT domain factors Immunoglobulin fold MIN6 Pancreas Cell line GEO GSE85496 GPL6887 - txt
siRNA Dux Mus musculus Homeo domain factors Helix-turn-helix domains ES cells Embryo Cell line GEO GSE100938 GPL21103 29937225 txt
siRNA Ncl Mus musculus Others TcoF-DB_
TcoF
ES cells Embryo Cell line GEO GSE100938 GPL21103 29937225 txt
siRNA Dnmt3a Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains iPSC Embryo Cell line GEO GSE104250 GPL17021 32614092 txt
siRNA Dnmt3b Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains iPSC Embryo Cell line GEO GSE104250 GPL17021 32614092 txt
siRNA Dnmt1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains Embryo Embryo Tissue GEO GSE111265 GPL21626 - txt
siRNA Zbp1 Mus musculus Others TcoF-DB_
TF
bone marrow-derived mesenchymal stem_progenitor cells Bone_marrow Stem cell GEO GSE117334 GPL21493 32195010 txt
siRNA Brca1 Mus musculus Others TcoF-DB_
TF
Embryonic fibroblasts Embryo Primary cell GEO GSE118677 GPL19057 32351783 txt
siRNA Ezh2 Mus musculus Others TcoF-DB_
TF
Mesenchymal stem cells Bone_marrow In vitro differentiated cell GEO GSE138980 GPL13112 32022326 txt
siRNA Usp7 Mus musculus Others TcoF-DB_
TcoF
ES cells Embryo Cell line GEO GSE149341 GPL17021 - txt
siRNA Ets2 Mus musculus Tryptophan cluster factors Helix-turn-helix domains Trophoblast stem (TS) cells Embryo Stem cell GEO GSE62168 GPL1261 25446535 txt
siRNA Hmg20a Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains Primary hypothalamic astrocytes Hypothalamus Cell line GEO GSE161334 GPL19057 34093866 txt
siRNA Hoxa5 Mus musculus Homeo domain factors Helix-turn-helix domains Adult mouse cardiomyocytes Heart Primary cell GEO GSE165497 GPL24247 - txt
siRNA Foxq1 Mus musculus Fork head / winged helix factors Helix-turn-helix domains NM18 Mammary_
gland
Cell line GEO GSE23833 GPL8321 20717954 txt
siRNA Gata1 Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains Bone marrow-derived mast cells Bone_marrow Primary cell GEO GSE52254 GPL13912 24615013 txt
siRNA Gata3 Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains CD4+ T helper (Th) cells Peripheral_
blood
Primary cell GEO GSE46185 GPL1261 23824597 txt
siRNA Gata4 Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains TM4 Testis Cell line GEO GSE74471 GPL6887 26974005 txt
siRNA Prmt1 Mus musculus Arginine methyltransferase Histone-modifying Enzymes 3T3-L1 cells Adipose_
tissue
Cell line GEO GSE197065 GPL13112 35921899 txt
siRNA Tet1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains Embryonic fibroblasts Embryo Primary cell GEO GSE48206 GPL16417 24162740 txt
siRNA Kdm5b Mus musculus ARID domain factors Helix-turn-helix domains ES cells Embryo Cell line GEO GSE63285 GPL17021 - txt
siRNA Mbd1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains 3T3-L1 cells Adipose_
tissue
Cell line GEO GSE73231 GPL1261 26590716 txt
siRNA Dnmt3a Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains embryonic cardiomyocytes Heart Primary cell GEO GSE77514 GPL19057 27306334 txt
siRNA Dnmt3b Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains embryonic cardiomyocytes Heart Primary cell GEO GSE77514 GPL19057 27306334 txt
siRNA Dnmt1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains embryonic cardiomyocytes Heart Primary cell GEO GSE81446 GPL19057 34235895 txt
siRNA Hnrnpk Mus musculus HNRNP TcoF-DB_
TF
ES cells Embryo Cell line GEO GSE84386 GPL13112 27741228 txt
siRNA p63 Mus musculus p53 domain factors Immunoglobulin fold Primary keratinocytes Skin Primary cell GEO GSE10564 GPL8321 18441228 txt
siRNA Pparg Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Preadipocytes Adipose_
tissue
Tissue GEO GSE103474 GPL10333 - txt
shRNA Sox2 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains ES cells Embryo Cell line GEO GSE34170 GPL6885 23169531 txt
shRNA Tcf7 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains EML Hematopoietic Cell line GEO GSE30068 GPL6887 22412390 txt
shRNA Tet2 Mus musculus Others TcoF-DB_
TF
HAFTL Macrophage_
cells
Cell line GEO GSE39666 GPL10333 22981865 txt
shRNA Tet2 Mus musculus Others TcoF-DB_
TF
ES cells Embryo Cell line GEO GSE41721 GPL11180 23222540 txt
shRNA Tsc22d4 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Liver Liver Tissue GEO GSE33324 GPL9746 23307490 txt
shRNA Tsc22d4 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Abdominal fat Adipose_
tissue
Tissue GEO GSE53753 GPL17791 - txt
shRNA Tsc22d4 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Abdominal fat Adipose_
tissue
Tissue GEO GSE53754 GPL17791 - txt
shRNA Tet1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains ES cells Embryo Cell line GEO GSE26900 GPL6887 21295276 txt
shRNA Ncoa3 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains ES cells Embryo Cell line GEO GSE40192 GPL6887 23019124 txt
shRNA Ncoa3 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains ES cells Embryo Cell line GEO GSE40193 GPL6887 23019124 txt
shRNA Dnmt1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains Embryonic fibroblasts Embryo Primary cell GEO GSE47501 GPL10333 23754744 txt
shRNA Cebpa Mus musculus Basic leucine zipper factors (bZIP) Basic domains lineage-negative marrow progenitors Bone_marrow Cell line GEO GSE55760 GPL6887 24752325 txt
shRNA Tet1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains ES cells Embryo Cell line GEO GSE24842 GPL11078 21490601 txt
shRNA Tet1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains ES cells Embryo Cell line GEO GSE24843 GPL11078 21490601 txt
shRNA Tet1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains ES cells Embryo Cell line GEO GSE26830 GPL1261 21451524 txt
shRNA Tet1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains ES cells Embryo Cell line GEO GSE26833 GPL1261 21451524 txt
shRNA Bptf Mus musculus Bromodomain Chromatin Remodeling Factors 4T1 cells Mammary_
gland
Cell line GEO GSE71864 GPL8321 27651309 txt
shRNA Smarca4 Mus musculus Others TcoF-DB_
TF
ES cells Embryo Cell line GEO GSE79652 GPL10787 27154007 txt
shRNA Smarca4 Mus musculus Others TcoF-DB_
TF
ES cells Embryo Cell line GEO GSE79655 GPL10787 27154007 txt
shRNA Dnmt3l Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains ES cells Embryo Cell line GEO GSE44643 GPL6887 24074865 txt
shRNA Fubp1 Mus musculus Others TcoF-DB_
TF
brain neural progenitors Brain Tissue GEO GSE108537 GPL19057 29606613 txt
shRNA Tet1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains MLL-ENL-ERtm Muscle Cell line GEO GSE116548 GPL15103 - txt
shRNA Crebbp Mus musculus Others Co-activator/repressors preSC Lung Cell line GEO GSE117550 GPL17021 30181244 txt
shRNA Nsd2 Mus musculus HMG Other Alpha-Helix Group NPK Prostate Cell line GEO GSE118784 GPL17021 - txt
shRNA Fubp1 Mus musculus Others TcoF-DB_
TF
BM cells Bone_marrow Primary cell GEO GSE124304 GPL13112 30635626 txt
shRNA Atoh8 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains mPAC L20 Pancreas Cell line GEO GSE43537 GPL1261 - txt
shRNA Kat6b Mus musculus C2HC zinc finger factors Zinc-coordinating DNA-binding domains LT-HSCs Bone_marrow Cell line GEO GSE133304 GPL19057 - txt
shRNA Cebpa Mus musculus Basic leucine zipper factors (bZIP) Basic domains Marrow progenitors Bone_marrow Primary cell GEO GSE55760 GPL6887 24752325 txt
shRNA Cebpb Mus musculus Basic leucine zipper factors (bZIP) Basic domains 4T1 mammary tumor cells Mammary_
gland
Primary cell GEO GSE40825 GPL15887 - txt
shRNA Setd1a Mus musculus SET TcoF-DB_
TcoF
Retina Eye Tissue GEO GSE154498 GPL21493 33938913 txt
shRNA Esrrb Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains ES cells Embryo Cell line GEO GSE34170 GPL6885 23169531 txt
shRNA Brpf1 Mus musculus Others Other Cofactors Neural progenitor cells Nerve Primary cell GEO GSE157903 GPL17021 33744924 txt
shRNA Foxk1 Mus musculus Fork head / winged helix factors Helix-turn-helix domains MEFs Embryo Primary cell GEO GSE112701 GPL1261 - txt
shRNA Junb Mus musculus Basic leucine zipper factors (bZIP) Basic domains Tibialis anterior muscle Tibialis_
anterior_
muscle
Tissue GEO GSE18664 GPL4134 20921137 txt
shRNA Setdb1 Mus musculus Others ENCODE_
TF
NE-4C Neuron Cell line GEO GSE192373 GPL24247 35671824 txt
shRNA Klf17 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains 168FARN Mammary_
gland
Cell line GEO GSE17081 GPL6238 19801974 txt
shRNA Klf6 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HCC Liver Cell line GEO GSE54762 GPL1261 26876204 txt
shRNA Ezh2 Mus musculus Others TcoF-DB_
TF
SVZ derived neural stem cells Brain Stem cell GEO GSE63853 GPL13112 25600873 txt
shRNA Mef2a Mus musculus MADS box factors alpha-Helices exposed by beta-structures C2C12 Muscle Cell line GEO GSE63798 GPL19485 25416778 txt
shRNA Mef2b Mus musculus MADS box factors alpha-Helices exposed by beta-structures C2C12 Muscle Cell line GEO GSE63798 GPL19485 25416778 txt
shRNA Mef2c Mus musculus MADS box factors alpha-Helices exposed by beta-structures C2C12 Muscle Cell line GEO GSE63798 GPL19485 25416778 txt
shRNA Mef2d Mus musculus MADS box factors alpha-Helices exposed by beta-structures C2C12 Muscle Cell line GEO GSE63798 GPL19485 25416778 txt
shRNA Myb Mus musculus Tryptophan cluster factors Helix-turn-helix domains AML cells Hematopoietic Cell line GEO GSE30745 GPL1261 21828272 txt
shRNA Myb Mus musculus Tryptophan cluster factors Helix-turn-helix domains Tracheal epithelial cell Lung Primary cell GEO GSE60365 GPL17543 25103188 txt
shRNA Pcbp1 Mus musculus Others TcoF-DB_
TF
Th1 Thymus Primary cell GEO GSE84699 GPL13112 29958803 txt
shRNA Dux Mus musculus Homeo domain factors Helix-turn-helix domains ES cells Embryo Cell line GEO GSE94324 GPL17021 28459456 txt
shRNA Setdb1 Mus musculus Others ENCODE_
TF
ES cells Embryo Cell line GEO GSE94444 GPL19057 29351814 txt
shRNA Nfix Mus musculus SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold LSK Muscle Cell line GEO GSE45492 GPL11180 24041575 txt
shRNA Prdm2 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains C2C12 Muscle Cell line GEO GSE58676 GPL1261 26040698 26697392 txt
shRNA Rest Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains ES cells Embryo Cell line GEO GSE28141 GPL6885 21632747 txt
shRNA Rest Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains NSP Brain Cell line GEO GSE38538 GPL1261 22791895 txt
shRNA Sall4 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains ES cells Embryo Cell line GEO GSE14219 GPL1261 19350679 txt
RNAi Npas4 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Hippocampal Neurons Brain Primary cell GEO GSE11258 GPL1261 18815592 txt
knockout Smad4 Mus musculus SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold Aortic arteries Aorta Tissue GEO GSE67182 GPL1261 - txt
knockout Snai1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Embryoid body Embryo Tissue GEO GSE53106 GPL1261 24401905 txt
knockout Snai1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Teratoma Embryo Tissue GEO GSE53106 GPL1261 24401905 txt
knockout Snai1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Embryonic stem cells (ESCs) Embryo Stem cell GEO GSE53107 GPL1261 24401905 txt
knockout Snai1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Embryonic stem cells (ESCs) Embryo Stem cell GEO GSE53108 GPL11180 24401905 txt
knockout Snai1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Small intestinal organoid Intestine Tissue GEO GSE65005 GPL6887 27054090 txt
knockout Sohlh1 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Ovary Ovary Tissue GEO GSE24816 GPL6887 - txt
knockout Sohlh2 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Ovary Ovary Tissue GEO GSE24816 GPL6887 - txt
knockout Sox11 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains Retina Eye Tissue GEO GSE43089 GPL1261 - txt
knockout Sox11 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains Cortex Brain Tissue GEO GSE44308 GPL1261 23483698 txt
knockout Sox21 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains Incisor Tooth Tissue GEO GSE99359 GPL13912 32674056 txt
knockout Sox6 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains Cardiac ventricle Heart Tissue GEO GSE60958 GPL6887 27832192 txt
knockout Sox9 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains Trachea Lung Tissue GEO GSE97788 GPL6885 27941074 txt
knockout Sp3 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Heart Heart Tissue GEO GSE9124 GPL1261 17923686 txt
knockout Spdef Mus musculus Tryptophan cluster factors Helix-turn-helix domains Colon Colon Tissue GEO GSE20299 GPL8759 20801882 txt
knockout Spdef Mus musculus Tryptophan cluster factors Helix-turn-helix domains Stomach Stomach Tissue GEO GSE20299 GPL8759 20801882 txt
knockout Srf Mus musculus MADS box factors alpha-Helices exposed by beta-structures Aorta Aorta Tissue GEO GSE34545 GPL1261 - txt
knockout Srf Mus musculus MADS box factors alpha-Helices exposed by beta-structures Denate gyrus of hippocampus Brain Tissue GEO GSE60772 GPL17543 25636686 txt
knockout Stat3 Mus musculus STAT domain factors Immunoglobulin fold Lung typeII cells Lung Cell line GEO GSE6846 GPL1261 18070348 txt
knockout Stat4 Mus musculus STAT domain factors Immunoglobulin fold Lamina propria lymphocytes Lymph Primary cell GEO GSE124078 GPL11202 30770344 txt
knockout Stat6 Mus musculus STAT domain factors Immunoglobulin fold Bone marrow-derived macrophages Bone_marrow Primary cell GEO GSE25088 GPL1261 21093321 24314139 txt
knockout Tbx1 Mus musculus T-Box factors Immunoglobulin fold Otic vesicles Ear Tissue GEO GSE34064 GPL1261 - txt
knockout Tbx1 Mus musculus T-Box factors Immunoglobulin fold Otic vesicles Ear Tissue GEO GSE34065 GPL1261 - txt
knockout Tet2 Mus musculus Others TcoF-DB_
TF
Kidney Kidney Tissue GEO GSE116911 GPL1261 - txt
knockout Thap1 Mus musculus C2CH THAP-type zinc finger factors Zinc-coordinating DNA-binding domains Cerebellum Brain Tissue GEO GSE97372 GPL6885 28697333 txt
knockout Thap1 Mus musculus C2CH THAP-type zinc finger factors Zinc-coordinating DNA-binding domains Cortex Brain Tissue GEO GSE97372 GPL6885 28697333 txt
knockout Thap1 Mus musculus C2CH THAP-type zinc finger factors Zinc-coordinating DNA-binding domains Striatum Brain Tissue GEO GSE97372 GPL6885 28697333 txt
knockout Thap11 Mus musculus C2CH THAP-type zinc finger factors Zinc-coordinating DNA-binding domains Heart Heart Tissue GEO GSE103959 GPL6887 29117561 txt
knockout Thap11 Mus musculus C2CH THAP-type zinc finger factors Zinc-coordinating DNA-binding domains ES cells Embryo Cell line GEO GSE120008 GPL1261 - txt
knockout Vax2 Mus musculus Homeo domain factors Helix-turn-helix domains Whole eye Eye Tissue GEO GSE19626 GPL8321 21148184 txt
knockout Vdr Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Bone marrow-derived macrophages Bone_marrow Primary cell GEO GSE2421 GPL339 16118315 txt
knockout Vdr Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Skin Skin Tissue GEO GSE68723 GPL6885 - txt
knockout Vdr Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Skin Skin Tissue GEO GSE68727 GPL6885 - txt
knockout Vdr Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Skin Skin Tissue GEO GSE68729 GPL6885 - txt
knockout Wt1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Kidney Kidney Tissue GEO GSE58073 GPL2995 25031030 txt
knockout Wt1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Oviduct Oviduct Tissue GEO GSE75924 GPL1261 28334862 txt
knockout Yy1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Skeletal muscle Muscle Tissue GEO GSE39009 GPL8321 22711985 txt
knockout Yy1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Jejunum crypt epithelium Intestine Tissue GEO GSE53496 GPL1261 24821761 txt
knockout Yy1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Subcutaneous white adipose tissue White_
adipose_
tissue
Tissue GEO GSE68382 GPL8321 26503783 txt
knockout Yy1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Visceral white adipose tissue White_
adipose_
tissue
Tissue GEO GSE70562 GPL8321 26503783 txt
knockout Rag1 Mus musculus Others Unclassified Structure Liver Liver Tissue GEO GSE205510 GPL32323 35833123 txt
knockout Dnmt1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains Embryonic fibroblasts Embryo Primary cell GEO GSE3534 GPL339 17311920 txt
knockout Bptf Mus musculus Bromodomain Chromatin Remodeling Factors Embryonic fibroblasts Embryo Primary cell GEO GSE48123 GPL6887 25348714 txt
knockout Prdm11 Mus musculus Others Unclassified Structure Lung Lung Tissue GEO GSE49705 GPL6885 - txt
knockout Dnmt3a Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains Bone marrow-derived osteoclasts Bone_marrow In vitro differentiated cell GEO GSE59387 GPL13912 - txt
knockout Brca1 Mus musculus Others TcoF-DB_
TF
mouse P7 brain Brain Tissue GEO GSE6310 GPL1261 21901007 txt
knockout Brca1 Mus musculus Others TcoF-DB_
TF
mouse P7 cortex Brain Tissue GEO GSE6310 GPL340 21901007 txt
knockout Brca1 Mus musculus Others TcoF-DB_
TF
mouse P7 cortex Brain Tissue GEO GSE6310 GPL8321 21901007 txt
knockout Brca1 Mus musculus Others TcoF-DB_
TF
CD24+ primary mammary epithelial cells Mammary_
gland
Cell line GEO GSE67440 GPL6885 26941120 txt
knockout Dnmt3b Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains Cardiac ventricle Heart Tissue GEO GSE68518 GPL6887 26098432 txt
knockout Bcl11b Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains main olfactory epithelium (MOE) Main_olfactory_
epithelium
Tissue GEO GSE90798 GPL1261 31531404 txt
knockout Dnmt3a Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains Satellite cells Skeletal_
muscle
Stem cell GEO GSE97340 GPL10333 29146735 txt
knockout Gata4 Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains Primary liver sinusoidal endothelial cells Liver Primary cell GEO GSE141001 GPL24557 32916216 txt
knockout Kdm5b Mus musculus ARID domain factors Helix-turn-helix domains left ventricles Heart Tissue GEO GSE197223 GPL7202 36481938 txt
knockout Dnmt3a Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains Hematopoietic stem cell (HSC) Haematopoietic_
and_lymphoid_
tissue
Stem cell GEO GSE27322 GPL1261 22138693 txt
knockout Tet1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains ES cells Embryo Cell line GEO GSE30748 GPL4134 21816367 txt
knockout Ezh2 Mus musculus Others TcoF-DB_
TF
CD8+ T cells Lymph Primary cell GEO GSE40741 GPL11180 - txt
knockout Tet1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains brain cortex Cortex Tissue GEO GSE48789 GPL10333 24050401 txt
knockout Tet1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains Hippocampus Hippocampus Tissue GEO GSE48789 GPL10333 24050401 txt
knockout Ezh2 Mus musculus Others TcoF-DB_
TF
CD45.2+LSK cells Bone_marrow Primary cell GEO GSE50537 GPL10787 24953053 txt
knockout Crebbp Mus musculus Others Co-activator/repressors Germinal center B cells Spleen Primary cell GEO GSE88799 GPL1261 28069569 txt
knockout Rag1 Mus musculus Others Unclassified Structure Mice fractured callus Bone Tissue GEO GSE99128 GPL6885 28596766 txt
knockout Dnmt1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains Liver Liver Tissue GEO GSE67734 GPL6885 - txt
knockout Ezh1 Mus musculus Others Other Cofactors LSK Muscle Cell line GEO GSE36288 GPL10787 23122289 txt
knockout Siah2 Mus musculus Others Other Cofactors Primary isolated cells Heart Primary cell GEO GSE154667 GPL21810 - txt
knockout Mapk9 Mus musculus Others TcoF-DB_
TcoF
Mouse Hip Cartilage Hip Tissue GEO GSE155892 GPL6887 33392255;36182100 txt
knockout Mapk9 Mus musculus Others TcoF-DB_
TcoF
Mouse total knee Knee Tissue GEO GSE155896 GPL6887 - txt
knockout Hipk2 Mus musculus HIPK Other Cofactors cardiac tissue Heart Tissue GEO GSE169429 GPL21163 36182775 txt
knockout Lin28a Mus musculus Others Beta-Scaffold Factors Heart Heart Tissue GEO GSE106897 GPL17021 30636447 txt
knockout Twist1 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains stromal cells Bone_marrow Cell line GEO GSE107814 GPL21103 30026340 txt
knockout Kat6a Mus musculus C2HC zinc finger factors Zinc-coordinating DNA-binding domains Embryonic fibroblasts Embryo Primary cell GEO GSE108242 GPL19057 30069049 txt
knockout Ezh2 Mus musculus Others TcoF-DB_
TF
calvaria Calvaria Tissue GEO GSE111245 GPL13112 - txt
knockout Kmt2d Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains iBiP melanoma mouse model tumor cell Skin Cell line GEO GSE116852 GPL13112 33086062 txt
knockout Mecp2 Mus musculus Others TcoF-DB_
TF
brown adipose tissue Adipose_
tissue
Tissue GEO GSE117517 GPL21273 - txt
knockout Mecp2 Mus musculus Others TcoF-DB_
TF
inguinal adipose tissue Adipose_
tissue
Tissue GEO GSE117517 GPL21273 - txt
knockout Eed Mus musculus Others TcoF-DB_
TcoF
Forebrain Brain Tissue GEO GSE123331 GPL13112 35048973 txt
knockout Eed Mus musculus Others TcoF-DB_
TcoF
hindbrain Brain Tissue GEO GSE123331 GPL13112 35048973 txt
knockout Eed Mus musculus Others TcoF-DB_
TcoF
midbrain Brain Tissue GEO GSE123331 GPL13112 35048973 txt
knockout Adnp Mus musculus Homeo domain factors Helix-turn-helix domains Whole embryonic body Embryo Tissue GEO GSE4068 GPL339 30106381 txt
knockout Eed Mus musculus Others TcoF-DB_
TcoF
spinal cord Spinal_
cord
Tissue GEO GSE123331 GPL13112 35048973 txt
knockout Ahr Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Liver Liver Tissue GEO GSE10082 GPL1261 16214954 txt
knockout Ahr Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Lung Lung Tissue GEO GSE48130 GPL4134 25119038 txt
knockout Bcl3 Mus musculus Rel homology region (RHR) factors Immunoglobulin fold Osteoblast Bone Primary cell GEO GSE125153 GPL21103 - txt
knockout Arid1a Mus musculus ARID domain factors Helix-turn-helix domains Liver Liver Tissue GEO GSE58964 GPL7202 - txt
knockout Arhgap35 Mus musculus Others TcoF-DB_
TF
Ventral spinal cord Ventral_
spinal_
cord
Tissue GEO GSE126534 GPL17021 30902550 txt
knockout Arid1a Mus musculus ARID domain factors Helix-turn-helix domains Ovary Ovary Tissue GEO GSE67695 GPL1261 26279473 txt
knockout Sirt6 Mus musculus Sirtuin Chromatin Remodeling Factors Liver Liver Tissue GEO GSE129370 GPL23479 - txt
knockout Atf3 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Breast tumor-associated macrophage Mammary_
gland
Primary cell GEO GSE36904 GPL7202 23921126 txt
knockout Ctnnb1 Mus musculus Casein Co-activator/repressors MGE cells Embryo Cell line GEO GSE130320 GPL17021 34460072 txt
knockout Nsd2 Mus musculus HMG Other Alpha-Helix Group Bone marrow immature B cells Bone_marrow Primary cell GEO GSE130550 GPL17021 31636135 txt
knockout Atf4 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Embryonic neurons Brain Primary cell GEO GSE10470 GPL6100 18458112 txt
knockout Nr4a1 Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains PyVT mouse mammary tumor cells Mammary_
gland
Cell line GEO GSE131895 GPL24247 33087562 txt
knockout Atf4 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Quadriceps femoris muscles Muscle Cell line GEO GSE72658 GPL6885 26338703 txt
knockout Dux Mus musculus Homeo domain factors Helix-turn-helix domains Embryo Embryo Tissue GEO GSE132045 GPL24247 31591446 txt
knockout Atoh1 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Intestinal epithelial Lgr5(hi) stem cells Gastrointestinal_
tissue
Stem cell GEO GSE41541 GPL8321 23428873 txt
knockout Bcl11a Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Bone marrow erythoid progenitors Bone_marrow Primary cell GEO GSE28333 GPL1261 21998251 txt
knockout Dux Mus musculus Homeo domain factors Helix-turn-helix domains Embryo Embryo Tissue GEO GSE134832 GPL24247 31591446 txt
knockout Bcl6 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Bone marrow-derived macrophages Bone_marrow Primary cell GEO GSE16527 GPL1261 - txt
knockout Lin28b Mus musculus CSD Beta-Scaffold Factors Bone marrow immature B cells Bone_marrow Primary cell GEO GSE135603 GPL19057 31562190 txt
knockout Bcl6 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Myeloid cells Bone_marrow Primary cell GEO GSE24813 GPL1261 21911423 txt
knockout Bhlha9 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Whole limb bud Limb Tissue GEO GSE81223 GPL1261 28324176 txt
knockout Cbx2 Mus musculus Others Chromatin Remodeling Factors Embryonic gonads Gonads Tissue GEO GSE29485 GPL1261 22186409 txt
knockout Usp7 Mus musculus Others TcoF-DB_
TcoF
ES cells Embryo Cell line GEO GSE141788 GPL21273 32894293 txt
knockout Cebpb Mus musculus Basic leucine zipper factors (bZIP) Basic domains Mammary epithlial cells (MECs) Mammary_
gland
Cell line GEO GSE16380 GPL1261 20054865 txt
knockout Pcgf6 Mus musculus PCGF TcoF-DB_
TF
Brain Brain Tissue GEO GSE143206 GPL27973 32482889 txt
knockout Cebpb Mus musculus Basic leucine zipper factors (bZIP) Basic domains Bone marrow-derived macrophages Bone_marrow Primary cell GEO GSE23821 GPL1261 21072215 txt
knockout Pcgf6 Mus musculus PCGF TcoF-DB_
TF
Liver Liver Tissue GEO GSE143206 GPL27973 32482889 txt
knockout Pcgf6 Mus musculus PCGF TcoF-DB_
TF
Testis Testis Tissue GEO GSE143206 GPL27973 32482889 txt
knockout Cebpe Mus musculus Basic leucine zipper factors (bZIP) Basic domains Bone marrow-derived macrophages Bone_marrow Primary cell GEO GSE23821 GPL1261 21072215 txt
knockout Dnmt1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains mature Pvergic cortical interneurons Cortex Tissue GEO GSE145025 GPL17021 32147726 txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Testes Testis Tissue GEO GSE18396 GPL1261 20007774 txt
knockout Zmat3 Mus musculus Others TcoF-DB_
TF
Embryonic fibroblasts Embryo Primary cell GEO GSE145430 GPL13112 - txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Juvenile testes Testis Tissue GEO GSE22500 GPL10572 20616082 txt
knockout Setd2 Mus musculus SET TcoF-DB_
TcoF
primary renal tubular epithelial (RTE) cells Kidney Primary cell GEO GSE146541 GPL17021 35115713 txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Juvenile testes Testis Tissue GEO GSE22507 GPL10572 20616082 txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Juvenile testes Testis Tissue GEO GSE22508 GPL10572 20616082 txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Juvenile testes Testis Tissue GEO GSE22510 GPL10572 20616082 txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Testes Testis Tissue GEO GSE41895 GPL1261 - txt
knockout Med19 Mus musculus Mediator complex Co-activator/repressors Gonadal white adipose tissue White_
adipose_
tissue
Tissue GEO GSE150250 GPL13112 33027649 txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Ovary Ovary Tissue GEO GSE41896 GPL1261 - txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Ovary Ovary Tissue GEO GSE41897 GPL1261 - txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Testes Testis Tissue GEO GSE41897 GPL1261 - txt
knockout Irf8 Mus musculus Tryptophan cluster factors Helix-turn-helix domains mice brain Brain Tissue GEO GSE154002 GPL24247 34379515 txt
knockout E2f4 Mus musculus Fork head / winged helix factors Helix-turn-helix domains Forebrain Brain Tissue GEO GSE10401 GPL339 - txt
knockout E2f4 Mus musculus Fork head / winged helix factors Helix-turn-helix domains Forebrain Brain Tissue GEO GSE10401 GPL340 - txt
knockout Mkl1 Mus musculus Others TcoF-DB_
TcoF
Bone marrow differentiated macrophages Bone_marrow Cell line GEO GSE155298 GPL21626 - txt
knockout Elf5 Mus musculus Tryptophan cluster factors Helix-turn-helix domains Mammary gland Mammary_
gland
Tissue GEO GSE32103 GPL1261 23086238 txt
knockout Tfap2a Mus musculus Basic helix-span-helix factors (bHSH) Basic domains Brain Brain Tissue GEO GSE155629 GPL21103 32769099 txt
knockout En2 Mus musculus Homeo domain factors Helix-turn-helix domains Cerebellum Brain Tissue GEO GSE51612 GPL7202 24355397 txt
knockout En2 Mus musculus Homeo domain factors Helix-turn-helix domains Hippocampus Hippocampus Tissue GEO GSE51612 GPL7202 24355397 txt
knockout Sirt3 Mus musculus Sirtuin Chromatin Remodeling Factors pancreatic beta cell Pancreatic_
islets
Primary cell GEO GSE156345 GPL19057 - txt
knockout Phf8 Mus musculus PHF Chromatin Remodeling Factors Prostate prostate Tissue GEO GSE157621 GPL21273 33009820 txt
knockout Foxa2 Mus musculus Fork head / winged helix factors Helix-turn-helix domains Whole lung Lung Tissue GEO GSE19204 GPL1261 20483781 txt
knockout Arid2 Mus musculus ARID domain factors Helix-turn-helix domains LSK Muscle Cell line GEO GSE164384 GPL19057 - txt
knockout Foxo1 Mus musculus Fork head / winged helix factors Helix-turn-helix domains Ventromedial hypothalamus Brain Tissue GEO GSE36948 GPL6887 - txt
knockout Dnmt1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains Keratinocytes Skin Primary cell GEO GSE166356 GPL17021 34586646 txt
knockout Foxp1 Mus musculus Fork head / winged helix factors Helix-turn-helix domains Lens Eye Tissue GEO GSE93693 GPL10787 28384713 txt
knockout Jmjd6 Mus musculus Others TcoF-DB_
TcoF
Lin-Sca1+Kit+ (LSK) haematopoietic stem and progenitor cells Bone_marrow Cell line GEO GSE168283 GPL19057 - txt
knockout Gata2 Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains renal collecting duct cells Kidney Tissue GEO GSE52448 GPL4134 24636993 txt
knockout Esr1 Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Liver Liver Tissue GEO GSE174535 GPL24247 34215813 txt
knockout Cited2 Mus musculus Others TcoF-DB_
TcoF
Hematopoietic stem cell (HSC) Haematopoietic_
and_lymphoid_
tissue
Stem cell GEO GSE175372 GPL19057 34715054 txt
knockout Gata4 Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains Jejunum Intestine Tissue GEO GSE11194 GPL1261 18812176 txt
knockout Gata5 Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains Left lung Lung Tissue GEO GSE47425 GPL1261 24199649 txt
knockout Suz12 Mus musculus Others TcoF-DB_
TcoF
Alveolar macrophage Lung Primary cell GEO GSE176111 GPL19057 34533976 txt
knockout Gfi1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains RAW264.7 Macrophage_
cells
Cell line GEO GSE152868 GPL1261 - txt
knockout Suz12 Mus musculus Others TcoF-DB_
TcoF
Alveolar macrophage Lung Primary cell GEO GSE176115 GPL19057 34533976 txt
knockout Gfi1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains T-cells Cord_Blood Primary cell GEO GSE4940 GPL339 18034420 txt
knockout Irf7 Mus musculus Tryptophan cluster factors Helix-turn-helix domains c-kit+ leukemic cells Bone_marrow Primary cell GEO GSE178560 GPL24247 35256780 txt
knockout Gfi1b Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Ter119 positive erythroid cells Bone_marrow Primary cell GEO GSE54205 GPL1261 24800817 txt
knockout Actl6a Mus musculus Actin Chromatin Remodeling Factors sciatic nerve Nerve Tissue GEO GSE179340 GPL21103 35434551 txt
knockout Grhl2 Mus musculus Grainyhead domain factors Immunoglobulin fold V6.5 Embryo Cell line GEO GSE93146 GPL6885 30017589 txt
knockout Ahr Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Liver Liver Tissue GEO GSE179398 GPL24247 36241614 txt
knockout Hnf1a Mus musculus Homeo domain factors Helix-turn-helix domains Jejunum Intestine Tissue GEO GSE23040 GPL1261 20808783 txt
knockout Satb2 Mus musculus CUT Helix-turn-helix Intestine epithelium Colon Primary cell GEO GSE180013 GPL24247 34582804 txt
knockout Hoxc13 Mus musculus Homeo domain factors Helix-turn-helix domains Skin Skin Tissue GEO GSE23759 GPL9746 - txt
knockout Arid1b Mus musculus ARID domain factors Helix-turn-helix domains bone marrow leukemia cells Bone_marrow Cell line GEO GSE188291 GPL19057 35022500 txt
knockout Hsf4 Mus musculus Heat shock factors Helix-turn-helix domains Lens Eye Tissue GEO GSE12415 GPL1261 - txt
knockout Arid2 Mus musculus ARID domain factors Helix-turn-helix domains bone marrow leukemia cells Bone_marrow Cell line GEO GSE188291 GPL19057 35022500 txt
knockout Id2 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Distal half of midgut Small_
intestine
Tissue GEO GSE43014 GPL2995 29463648 txt
knockout Kat7 Mus musculus C2HC zinc finger factors Zinc-coordinating DNA-binding domains Thymic epithelial cells Thymic_
lobes
Cell line GEO GSE188869 GPL19057 35061506 txt
knockout Irf6 Mus musculus Tryptophan cluster factors Helix-turn-helix domains Skin Skin Tissue GEO GSE5800 GPL1261 17041601 txt
knockout Kat7 Mus musculus C2HC zinc finger factors Zinc-coordinating DNA-binding domains Thymic epithelial cells Thymic_
lobes
Cell line GEO GSE188870 GPL19057 35061506 txt
knockout Irf8 Mus musculus Tryptophan cluster factors Helix-turn-helix domains Splenic CD11b+Gr-1 cells Lymph Primary cell GEO GSE39228 GPL6887 24091328 txt
knockout Bud31 Mus musculus Others TcoF-DB_
TcoF
Spermatogonial stem cells Testis Cell line GEO GSE189714 GPL24247 36114296 txt
knockout Jarid2 Mus musculus ARID domain factors Helix-turn-helix domains Embryonic pancreas Pancreas Tissue GEO GSE77238 GPL1261 28912479 txt
knockout Gata2 Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains Pituitary gland Brain Tissue GEO GSE189915 GPL24247 35643321 txt
knockout Padi2 Mus musculus Other_CRF Chromatin Remodeling Factors Testis Testis Tissue GEO GSE194034 GPL21273 36224627 txt
knockout Klf6 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Liver Liver Tissue GEO GSE85381 GPL11180 - txt
knockout Lhx8 Mus musculus Homeo domain factors Helix-turn-helix domains Oocytes Gonads Primary cell GEO GSE109473 GPL6887 29329412 txt
knockout Lhx8 Mus musculus Homeo domain factors Helix-turn-helix domains Ovary Ovary Tissue GEO GSE7774 GPL1261 18509161 txt
knockout Dnmt3l Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains Spermatogonial progenitor cells Testis Cell line GEO GSE54411 GPL16173 24850856 txt
knockout Lmx1b Mus musculus Homeo domain factors Helix-turn-helix domains Proximal limb Limb Tissue GEO GSE10516 GPL1261 18351676 txt
knockout Dnmt1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains Cortex Brain Tissue GEO GSE58261 GPL17021 25080494 txt
knockout Lmx1b Mus musculus Homeo domain factors Helix-turn-helix domains Kidney Kidney Tissue GEO GSE12008 GPL4134 18996370 txt
knockout Dnmt3a Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains Cortex Brain Tissue GEO GSE58261 GPL17021 25080494 txt
knockout Mafg Mus musculus Basic leucine zipper factors (bZIP) Basic domains Whole embryo Embryo Tissue GEO GSE29558 GPL4134 22158967 txt
knockout Mbd2 Mus musculus Others TcoF-DB_
TF
CD4+CD8+ thymocytes Thymus Primary cell GEO GSE105763 GPL1261 29330145 txt
knockout Ezh2 Mus musculus Others TcoF-DB_
TF
Retina Eye Tissue GEO GSE65082 GPL13112 25989023 txt
knockout Mbd2 Mus musculus Others TcoF-DB_
TF
GFP+ BM leukemia cells Lymph Primary cell GEO GSE105763 GPL1261 29330145 txt
knockout Ezh2 Mus musculus Others TcoF-DB_
TF
Retina Eye Tissue GEO GSE71463 GPL17021 27377164 txt
knockout Atrx Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains ES cells Embryo Cell line GEO GSE73881 GPL19057 - txt
knockout Dnmt3a Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains peritoneal macrophages Peritoneum Primary cell GEO GSE74750 GPL17021 27240213 txt
knockout Meis1 Mus musculus Homeo domain factors Helix-turn-helix domains KSL hematopoietic cells Hematopoietic Stem cell GEO GSE38336 GPL4134 24498346 txt
knockout Gtf2ird1 Mus musculus GTF2I Other Alpha-Helix Group Lip Lip Tissue GEO GSE81082 GPL13112 - txt
knockout Meis1 Mus musculus Homeo domain factors Helix-turn-helix domains Immortalized myeloid cell Bone_marrow Primary cell GEO GSE50645 GPL11180 27018596 txt
knockout Mkx Mus musculus Homeo domain factors Helix-turn-helix domains PDL Tooth Tissue GEO GSE92331 GPL21810 27993989 txt
knockout Ezh2 Mus musculus Others TcoF-DB_
TF
small intestinal crypts Small_
intestinal_
crypts
Tissue GEO GSE81576 GPL17021 27342214 txt
knockout Nelfb Mus musculus Others General Cofactors Embryonic fibroblasts Embryo Primary cell GEO GSE24114 GPL6885 21865163 txt
knockout Dnmt1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains kidney Cap Mesenchyme Kidney Cell line GEO GSE94089 GPL13112 34944697 txt
knockout Neurod1 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Pineal gland Eye Tissue GEO GSE35396 GPL1261 22784109 txt
knockout Neurod1 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Retina Eye Tissue GEO GSE35396 GPL1261 22784109 txt
knockout Neurod1 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Pineal gland Eye Tissue GEO GSE6030 GPL1261 17630985 txt
knockout Nfil3 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Prepro NK cells Bone_marrow Primary cell GEO GSE45955 GPL11180 - txt
knockout Nhlh2 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Retina Eye Tissue GEO GSE16756 GPL8321 - txt
knockout Nr2f2 Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains E14.5 Ovary Ovary Tissue GEO GSE100015 GPL1261 28818950 txt
knockout Nr2f2 Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains E16.5 Ovary Ovary Tissue GEO GSE100015 GPL1261 28818950 txt
knockout Otx2 Mus musculus Homeo domain factors Helix-turn-helix domains Retina Eye Tissue GEO GSE21900 GPL1261 21602925 txt
knockout Otx2 Mus musculus Homeo domain factors Helix-turn-helix domains Ganglionic eminences and septum Brain Tissue GEO GSE69547 GPL7202 26166575 txt
knockout Pax5 Mus musculus Paired box factors Helix-turn-helix domains B220+ cells Bone_marrow Primary cell GEO GSE39554 GPL1261 23019372 txt
knockout Pax6 Mus musculus Paired box factors Helix-turn-helix domains Surface ectoderm Embryo Tissue GEO GSE49228 GPL6887 21540023 txt
knockout Pbx1 Mus musculus Homeo domain factors Helix-turn-helix domains BM cells Bone_marrow Primary cell GEO GSE30028 GPL1261 23660001 txt
knockout Pitx2 Mus musculus Homeo domain factors Helix-turn-helix domains Cornea Eye Tissue GEO GSE76047 GPL10787 26968737 txt
knockout Plagl2 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Small intestine Intestine Tissue GEO GSE9123 GPL1261 17983586 txt
knockout Prdm1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Mid-intestine Intestine Tissue GEO GSE30556 GPL6885 21878906 txt
knockout Prdm14 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains ES cells Embryo Cell line GEO GSE45507 GPL6887 23670199 txt
knockout Prox1 Mus musculus Homeo domain factors Helix-turn-helix domains Liver Liver Tissue GEO GSE36583 GPL1261 24449835 txt
knockout Rest Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Brain Brain Tissue GEO GSE68368 GPL6885 26745185 txt
knockout Rest Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Brain Brain Tissue GEO GSE68459 GPL1261 26745185 txt
knockout Runx1 Mus musculus Runt domain factors Immunoglobulin fold Embryo Embryo Tissue GEO GSE2592 GPL1261 18671852 txt
knockout Runx1 Mus musculus Runt domain factors Immunoglobulin fold KSL cells Bone_marrow Primary cell GEO GSE40155 GPL8321 22919028 txt
knockout Runx1 Mus musculus Runt domain factors Immunoglobulin fold ProB cells Lymph Cell line GEO GSE45424 GPL7202 23704093 txt
knockout Runx1 Mus musculus Runt domain factors Immunoglobulin fold Luminal epithelial cells Mammary_
gland
Primary cell GEO GSE47375 GPL1261 25415051 txt
knockout Runx2 Mus musculus Runt domain factors Immunoglobulin fold Embryonic humeri Humeri Tissue GEO GSE4911 GPL81 16829211 txt
knockout Runx2 Mus musculus Runt domain factors Immunoglobulin fold Embryonic humeri Humeri Tissue GEO GSE4911 GPL82 16829211 txt
knockout Runx2 Mus musculus Runt domain factors Immunoglobulin fold Embryonic humeri Humeri Tissue GEO GSE4911 GPL83 16829211 txt
knockout Sall1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Kidney Kidney Tissue GEO GSE45841 GPL10787 24744442 txt
knockout Sall1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Kidney Kidney Tissue GEO GSE45844 GPL7202 24744442 txt
knockout Shox2 Mus musculus Homeo domain factors Helix-turn-helix domains Right atria Heart Tissue GEO GSE39924 GPL13730 23455426 txt
knockout Shox2 Mus musculus Homeo domain factors Helix-turn-helix domains Embryonic forelimb Muscle Tissue GEO GSE51523 GPL17791 24347445 txt
knockout Smad1 Mus musculus SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold Lung left lobe Lung Tissue GEO GSE26502 GPL1261 21270055 txt
knockdown Tet2 Mus musculus Others TcoF-DB_
TF
GMPs Muscle Cell line GEO GSE42666 GPL13912 24218139 txt
knockdown Tet2 Mus musculus Others TcoF-DB_
TF
LSK Muscle Cell line GEO GSE42666 GPL13912 24218139 txt
knockdown Pogz Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains fetal liver Liver Tissue GEO GSE113503 GPL1261 29898395 txt
knockdown Dnmt1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains intestinal tumor organoid Gastrointestinal_
tissue
Tissue GEO GSE72768 GPL5642 27143627 txt
knockdown Ezh2 Mus musculus Others TcoF-DB_
TF
Brain Brain Tissue GEO GSE50951 GPL6887 27538496 txt
knockdown Bcl11b Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Embryonic fibroblasts Embryo Primary cell GEO GSE83980 GPL1261 27586877 txt
knockdown Sfpq Mus musculus NonO domain factors Yet undefined DNA-binding domains P19 cells Embryo Cell line GEO GSE89023 GPL13912 29084942 txt
knockdown Sfpq Mus musculus NonO domain factors Yet undefined DNA-binding domains P19 cells Embryo Cell line GEO GSE89033 GPL13912 29084942 txt
knockdown Atf3 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Ly6G+ neutrophils Bone_marrow Primary cell GEO GSE53973 GPL13912 24470589 txt
knockdown Batf2 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Bone marrow-derived macrophages Bone_marrow Primary cell GEO GSE59210 GPL6887 25957166 txt
knockdown Cbfb Mus musculus Others beta-Scaffold Factors Peripheral CD4+CD25hi cells Peripheral_
blood
Primary cell GEO GSE18148 GPL1261 19800266 txt
knockdown Erg Mus musculus Tryptophan cluster factors Helix-turn-helix domains HSPCs Bone_marrow Primary cell GEO GSE48600 GPL1261 28436588 txt
knockdown Tbx20 Mus musculus T-Box factors Immunoglobulin fold primary cardiac fibroblasts Heart Primary cell GEO GSE175763 GPL19057 35293863 txt
knockdown Snai1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Heart Heart Tissue GEO GSE217528 GPL21273 - txt
knockdown Nrf1 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Liver Liver Tissue GEO GSE35124 GPL4134 22586274 txt
CRISPR Kdm2a Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains ES cells Embryo Cell line GEO GSE117148 GPL23479 31172793 txt
CRISPR Mef2d Mus musculus MADS box factors alpha-Helices exposed by beta-structures Cardiac ventricle Heart Tissue GEO GSE132992 GPL21103 - txt
CRISPR Myc Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains muscle stem cells Skeletal_
muscle
Stem cell GEO GSE133956 GPL18480 34534448 txt
CRISPR Myod1 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains myoblast Skeletal_
muscle
Primary cell GEO GSE137507 GPL24247 33468253 txt
CRISPR Gsk3b Mus musculus Others TcoF-DB_
TcoF
mPFC D2 neurons Neuron Tissue GEO GSE139564 GPL19057 32584144 txt
CRISPR Ssrp1 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains ES cells Embryo Cell line GEO GSE141788 GPL21273 32894293 txt
CRISPR Pdx1 Mus musculus Homeo domain factors Helix-turn-helix domains Liver Liver Tissue GEO GSE146847 GPL21103 34341582 txt
CRISPR Fli1 Mus musculus Tryptophan cluster factors Helix-turn-helix domains CD8 T cells Lymph Primary cell GEO GSE149838 GPL21626 - txt
CRISPR Kmt2d Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains MA1L Liver Cell line GEO GSE151225 GPL17021 32887696 txt
CRISPR Kmt2d Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains MA1L Liver Cell line GEO GSE151227 GPL17021 32887696 txt
CRISPR Ssrp1 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains ES cells Embryo Cell line GEO GSE155863 GPL21273 32894293 txt
CRISPR Satb2 Mus musculus CUT Helix-turn-helix Colon organoid Colon Organoid GEO GSE167283 GPL24247 34582804 txt
CRISPR Foxp3 Mus musculus Fork head / winged helix factors Helix-turn-helix domains CD4+ Th0 cells Spleens_
and_
lymphnodes
Primary cell GEO GSE167472 GPL19057 34341582 txt
CRISPR Myc Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains quiescent muscle stem cell Skeletal_
muscle
Stem cell GEO GSE175899 GPL18480 34534448 txt
CRISPR Gata4 Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains primary cardiac fibroblasts Heart Primary cell GEO GSE175763 GPL19057 35293863 txt
CRISPR Tbx20 Mus musculus T-Box factors Immunoglobulin fold primary cardiac fibroblasts Heart Primary cell GEO GSE175763 GPL19057 35293863 txt

Download Differentially Expressed Genes of All Datasets

Human Differential Expression of Genes: txt Mouse Differential Expression of Genes: txt
Arabidopsis thaliana Differential Expression of Genes: txt Zea mays Differential Expression of Genes: txt

Download Promoter, SE and TE Information of Each Gene

Human Promoter: txt Mouse Promoter: txt
Human Super-Enhancer: txt Mouse Super-Enhancer: txt
Human Typical Enhancer: txt Mouse Typical Enhancer: txt
Human T(co)F Motif: txt Mouse T(co)F Motif: txt
Human T(co)F ChIP-seq: txt Mouse T(co)F ChIP-seq: txt

Download (Epi)genetic Annotation File

Common SNP: eQTL:
Risk SNP : TFBS:
Super enhancer: Enhancer:
DHS: 450K:
WGBS: Interation:
TAD: CRISPR:
ATAC: Tcof:
TFBS: DHS:
Super enhancer: Enhancer:

Download T(co)F gmt File

human (top 100): mouse (top 100):
human (top 200): mouse (top 200):
human (top 500): mouse (top 500):